Python for Fortran programmers IV: only functions

Python only has functions, whereas Fortran has two types of procedures: functions and subroutines. Functions do something with the arguments and return a value. The analogy with mathematical functions is obvious: f(x)=cos2(x) is asking to be coded as a function. Subroutines are supposed to perform some tasks and/or return several arguments than cannot be returned with a function. A typical example could be a diagonalization subroutine, which returns the eigenvalues and the eigenvectors.
Fortran programmers find no problem in understanding Python functions, but how can we make a function that returns eigenvalues and eigenvectors?
Python is not the only language having only functions, in fact its pretty common, the exception being Fortran… But in Fortran we can code everything as a subroutine or everything as a function. subroutine cos2(x, res) could return the “function” value as an argument. And function diag(m, eigvec, eigval) could have the same arguments as the analogous subroutine and have a return value that just informs if the diagonalization succeeded.
This diagonalization function could be easily translated into a python function. Done? Not yet…
As Fortran programmers we tend to overuse the arguments to output results, and in Python the return value is much more flexible than in Fortran, because what the function returns is not fixed in size or type. So in Python it would make more sense to return the eigenvalues and the eigenvectors in the return statement and leave the arguments only as inputs to the function.
Let’s see two examples:
The Lapack diagonalization subroutine DSYEV has these arguments:


A contains the matrix to be diagonalized on input and the eigenvectors on output. The eigenvalues are returned in W. INFO returns 0 if successful. How is does the interface look like in Python?
Scipy contains wrappers to many Lapack subroutines. Although with Python we should call the higher-level routine scipy.linalg.eigh we can also call directly the Lapack routine:

>>> import numpy as np
>>> import scipy.linalg as la
>>> a = np.array(([[1,2,3], [2,4,5], [3,5,6]]))
>>> la.lapack.dsyev(a)
(array([ -0.51572947, 0.17091519, 11.34481428]), array([[ 0.73697623, 0.59100905, 0.32798528],
[ 0.32798528, -0.73697623, 0.59100905],
[-0.59100905, 0.32798528, 0.73697623]]), 0)

So it returns the eigenvalues, the eigenvectors and INFO. These arrays are created in the subroutine and can be assigned to variables which need not be defined. For example:

>>> vals, vecs, out = la.lapack.dsyev(a)

If the interface of dsyev was something like:

la.lapack.dsyev(a, w)

w should be defined before the call (with arbitrary values), something very unnatural in Python. I will discuss in the next post why I didn’t include info as an argument…

The second example is a function that concatenates two lists, only if the last element of the first list is the same as the first element of the second list. Otherwise it returns nothing (None):

def concat(l1, l2):
    if l1[-1]==l2[0]:
        return l1+l2
        return None

Because Python is dynamically typed, it is ok to return different types of variables in the same function depending on the case. Assigning a result to a variable will not produce an error:

l3 = concat([1,2,3], [4,5])

The code could continue by checking what is l3:

if l3 is None:
    do something
    do something_else

So do not be afraid of returning complex lists from a function and avoid changing the arguments values as much as possible, as this is a more clear coding style.


Tags: , , ,

About Ramon Crehuet

I'm a Computational Biochemist working at the IQAC institute of the Spanish National Research Council (CSIC)

2 responses to “Python for Fortran programmers IV: only functions”

  1. fermin says :

    Happy to see a new entry from this very interesting blog. I was missing it! Do you have an idea of what fortran mathematical routines have been “ported” to Python?
    Keep up the good work

Leave a Reply

Fill in your details below or click an icon to log in: Logo

You are commenting using your account. Log Out /  Change )

Google photo

You are commenting using your Google account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s

%d bloggers like this: